PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00503.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 226aa    MW: 25124.9 Da    PI: 5.3981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00503.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-19102152255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ +l+g
  Rsa1.0_00503.1_g00007.1 102 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 152
                              59*******.***********9998..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-23102161IPR016177DNA-binding domain
CDDcd000181.79E-30102162No hitNo description
PROSITE profilePS5103223.907102160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-32102161IPR001471AP2/ERF domain
SMARTSM003803.7E-36102166IPR001471AP2/ERF domain
PfamPF008478.3E-13103152IPR001471AP2/ERF domain
PRINTSPR003674.4E-13103114IPR001471AP2/ERF domain
PRINTSPR003674.4E-13142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSGFDYSELM SSPDSVNNGV NPPVFYRNPS FSNVILNDSW SDLPLSVDDS QDMAIYNTLR  60
DAFSSGWSPT VPPISSPAVV EEEKPATATA TAKAAPRQKG MQYRGVRRRP WGKFAAEIRD  120
PKKNGARVWL GTYETPEDAA VAYDRAAFQL KGSKAKLNFP HLIGTCEYEP VRIRPRRRSP  180
EPSVSDYSSP EQKSVGHVEE GESSFAVDQL YSDGGYLMDR SSYSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3199167270ATERF1
3gcc_A1e-3199167270ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725494.11e-143PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-124ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A078GDM41e-140A0A078GDM4_BRANA; BnaC04g49870D protein
TrEMBLA0A078GZB81e-140A0A078GZB8_BRANA; BnaA04g25900D protein
TrEMBLM4F9671e-140M4F967_BRARP; Uncharacterized protein
STRINGBra037630.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-100ethylene-responsive element binding factor 13